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COBREXA.jl
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  • COBREXA.jl in 10 minutes
  • Examples
    • Contents
    • Loading models
    • Converting, modifying and saving models
    • Exploring model contents
    • Generic accessors
    • CoreModel usage
    • Basic usage of StandardModel
    • Model construction and modification
    • Flux balance analysis (FBA)
    • Extending FBA with modifications
    • Flux variability analysis (FVA)
    • Gene knockouts
    • Restricting and disabling individual reactions
    • Parsimonious flux balance analysis (pFBA)
    • Loopless FBA
    • FBA with crowding
    • Growth media analysis
    • Maximum-minimum driving force analysis
    • Minimization of metabolic adjustment (MOMA)
    • sMOMENT
    • GECKO
    • Hit and run sampling
    • Production envelopes
  • Parallel, distributed and HPC processing
    • Contents
    • Parallel processing overview
    • Local parallel processing
    • Working in a HPC environment
    • Faster model distribution
  • Core concepts guide
    • Contents
    • Screening many model variants
    • Writing custom optimizer modifications
    • Working with custom models
    • Extending the models
  • Reference (Functions and types)
    • Contents
    • Analysis functions
    • Base functions
    • Input and output
    • Model construction functions
    • Types
    • Utilities
  • How to contribute
Version
  • Reference (Functions and types)
  • Contents
  • Contents
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API reference

  • Analysis functions
    • Common analysis functions
    • Sampling
    • Analysis modifiers
  • Base functions
  • Input and output
    • File I/O and serialization
    • Pretty printing
  • Model construction functions
    • Functions for changing the models
    • Variant specifiers
  • Types
    • Base types
    • Model types and contents
    • Model type wrappers
  • Utilities
    • Helper functions
    • Macro-generated functions and internal helpers
    • Logging and debugging helpers
« Extending the modelsAnalysis functions »

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This document was generated with Documenter.jl on Thursday 11 May 2023. Using Julia version 1.8.0.